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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_13512700_13513003_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13512700 - 13513003
Intron Length:
304

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCTGG
5'SS Class:
strong_major
3'SS Sequence:
TTTGGCATCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGGCAT
U12 Branch Point Sequence:
CAGTCTGTGACT
Flanking Amino Acid:
ELKKMVDMLQDSFPARFKAV
Intron Amino Acid Position:
278

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
65.8
42.7
Major BPS
59.9
0.25
1.5
71.4
45.1
Major PPT
68.2
0.41
0.9
59.4
41.7
Minor 5ss
37.8
-1.4
3
46.8
48.5
Minor BPS
49.6
0.05
2.1
67.06
44.4

Associated Gene:

Gene:
RLBP1
Ensembl Gene ID:
ENSAPLG00000005741
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005964
13510891 - 13513449
2559