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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_13524409_13525637_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13524409 - 13525637
Intron Length:
1229

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGAAGG
5'SS Class:
strong_major
3'SS Sequence:
CTATCCATTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATCCAT
U12 Branch Point Sequence:
GATGCTAGAAAC
Flanking Amino Acid:
SLMQIDDNVMRKFHGYSSLK
Intron Amino Acid Position:
309

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
68.1
42.8
Major BPS
69.5
0.49
1.2
78.7
34.9
Major PPT
77.7
0.62
0.9
74.3
34.8
Minor 5ss
39
-1.2
2.8
49
46.8
Minor BPS
43.4
-0.5
1.8
51.78
38.5

Associated Gene:

Gene:
ABHD2
Ensembl Gene ID:
ENSAPLG00000010961
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011428
13522197 - 13544848
22652