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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_13527489_13530926_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13527489 - 13530926
Intron Length:
3438

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCCTG
5'SS Class:
strong_major
3'SS Sequence:
GTGTTTTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTAAC
U12 Branch Point Sequence:
ACAGCTTAGATT
Flanking Amino Acid:
VSVCQGYSALRAQETFMQWD
Intron Amino Acid Position:
241

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
68.8
43.8
Major BPS
69.5
0.49
1
71.3
30.3
Major PPT
80.6
0.69
0.9
73.5
41.9
Minor 5ss
36
-1.6
3.2
46.7
48.6
Minor BPS
45.9
-0.2
1.7
56.66
40.9

Associated Gene:

Gene:
ABHD2
Ensembl Gene ID:
ENSAPLG00000010961
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011428
13522197 - 13544848
22652