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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_13531111_13533819_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13531111 - 13533819
Intron Length:
2709

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAGGTGCT
5'SS Class:
major
3'SS Sequence:
CCTTATTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTTAT
U12 Branch Point Sequence:
TTGTCCTTATTT
Flanking Amino Acid:
ELTSPRMFTYGCTWEFGAMV
Intron Amino Acid Position:
180

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1.1
70.1
40.6
Major BPS
78.8
0.72
1
67.9
40.1
Major PPT
86.3
0.82
0.8
83.9
30.7
Minor 5ss
34.4
-1.8
3.5
50.4
46
Minor BPS
74.8
0.86
1.5
87.69
38.3

Associated Gene:

Gene:
ABHD2
Ensembl Gene ID:
ENSAPLG00000010961
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011428
13522197 - 13544848
22652