About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_13533988_13535356_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13533988 - 13535356
Intron Length:
1369

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTCAGTCGC
5'SS Class:
major
3'SS Sequence:
TTTCTGTGCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTTAA
U12 Branch Point Sequence:
ATTTACTTAACT
Flanking Amino Acid:
FEPQSEHCTGEDVTMVICPG
Intron Amino Acid Position:
124

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1.3
67.1
44.6
Major BPS
74.4
0.61
0.9
63.9
34.9
Major PPT
76.3
0.59
1
71.7
38.2
Minor 5ss
30
-2.3
2.7
36.6
40.2
Minor BPS
83.6
1.13
1.3
95.93
29.1

Associated Gene:

Gene:
ABHD2
Ensembl Gene ID:
ENSAPLG00000010961
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011428
13522197 - 13544848
22652