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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_13535533_13543705_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13535533 - 13543705
Intron Length:
8173

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTAGG
5'SS Class:
major
3'SS Sequence:
CTCCCTCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTGAA
U12 Branch Point Sequence:
GGATGCGTAACT
Flanking Amino Acid:
LLKSCPLLTREYIPPLIWGK
Intron Amino Acid Position:
65

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75
0.59
1.1
66.4
45.1
Major BPS
65.6
0.39
0.9
55.4
32.7
Major PPT
81
0.7
0.7
72.4
32.3
Minor 5ss
36.4
-1.5
2.7
39
40.1
Minor BPS
48.6
-0
2.4
70.48
45.8

Associated Gene:

Gene:
ABHD2
Ensembl Gene ID:
ENSAPLG00000010961
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011428
13522197 - 13544848
22652