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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_13564343_13566644_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13564343 - 13566644
Intron Length:
2302

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TCCCCTTCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
CCCTTTTTACCT
Flanking Amino Acid:
LGLSLLLVVAGPCHPNPCHN
Intron Amino Acid Position:
25

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
0.9
69.7
35.1
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
76.1
0.59
0.7
68.3
31.9
Minor 5ss
29
-2.4
3.1
36.8
40.4
Minor BPS
54.1
0.21
1.7
65.89
45.8

Associated Gene:

Gene:
MFGE8
Ensembl Gene ID:
ENSAPLG00000011015
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030395
13564255 - 13572479
8225