About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_13566433_13566644_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13566433 - 13566644
Intron Length:
212

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGGCTC
5'SS Class:
major
3'SS Sequence:
TCCCCTTCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
CCCTTTTTACCT
Flanking Amino Acid:
VGIDCNETEKGPCHPNPCHN
Intron Amino Acid Position:
67

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1
63.9
42.4
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
76.1
0.59
0.7
68.3
31.9
Minor 5ss
28.5
-2.5
3.6
40.5
46
Minor BPS
54.1
0.21
1.7
65.89
45.8

Associated Gene:

Gene:
MFGE8
Ensembl Gene ID:
ENSAPLG00000011015
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011486
13564270 - 13572479
8210