Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_13568675_13569691_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

13568675 - 13569691

Intron Length:

1017

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACG|GTAAATTCC

5'SS Class:

major

3'SS Sequence:

TTCAACACGGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATTTCAA

U12 Branch Point Sequence:

TGTATTTCAACA

Flanking Amino Acid:

RFELIGCEMNGCSEPLGMKS

Intron Amino Acid Position:

308

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.1

0.64

69.5

Major BPS

0.79

0.8

83.7

25.7

Major PPT

0.25

1.1

55.5

39.6

Minor 5ss

41.3

-1

2.9

54.3

42.9

Minor BPS

58.2

0.25

1.5

68.8

37.4

Associated Gene:

Gene:

MFGE8

Ensembl Gene ID:

ENSAPLG00000011015

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030395

13564255 - 13572479

8225

ENSAPLT00000011486

13564270 - 13572479

8210