Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_13569877_13570807_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

13569877 - 13570807

Intron Length:

931

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGGGTCTG

5'SS Class:

strong_major

3'SS Sequence:

CTCTCTGTGCCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AACCCAA

U12 Branch Point Sequence:

GGTGCCCGACCC

Flanking Amino Acid:

LHNGQAEWLQIDLGDPKKVT

Intron Amino Acid Position:

370

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.6

0.72

68.8

43.8

Major BPS

48.6

-0

1.1

56.4

30.9

Major PPT

70.6

0.46

64.4

41.4

Minor 5ss

-2.2

3.2

46.1

Minor BPS

42.7

-0.5

2.1

53.77

43.3

Associated Gene:

Gene:

MFGE8

Ensembl Gene ID:

ENSAPLG00000011015

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030395

13564255 - 13572479

8225

ENSAPLT00000011486

13564270 - 13572479

8210