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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_13584721_13584942_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13584721 - 13584942
Intron Length:
222

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTCCC
5'SS Class:
strong_major
3'SS Sequence:
CCCCTCCCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGGTGAA
U12 Branch Point Sequence:
CCCTCCCCACAG
Flanking Amino Acid:
DFRWSDGHSLQFENWRPNQP
Intron Amino Acid Position:
2069

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
0.9
67.6
37.6
Major BPS
49.2
-0
1.3
40.8
41.4
Major PPT
70.8
0.47
0.7
63.9
24.5
Minor 5ss
30.2
-2.3
2.8
34
35
Minor BPS
37.5
-1
2
37
44.9

Associated Gene:

Gene:
ACAN
Ensembl Gene ID:
ENSAPLG00000011257
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018919
13584490 - 13629372
44883
ENSAPLT00000011772
13584490 - 13629372
44883