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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_13585270_13588173_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13585270 - 13588173
Intron Length:
2904

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTACGGCCT
5'SS Class:
major
3'SS Sequence:
TTGTGTGTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
TTGTCATCACGC
Flanking Amino Acid:
PSYGGDLCEIDLQNCEDGWT
Intron Amino Acid Position:
1988

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.1
0.47
1.1
58.5
46
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
78.8
0.65
1
72.9
42.2
Minor 5ss
32.8
-2
3.6
49
46.7
Minor BPS
43.9
-0.4
2.2
59.55
45.3

Associated Gene:

Gene:
ACAN
Ensembl Gene ID:
ENSAPLG00000011257
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011772
13584490 - 13629372
44883