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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_13588288_13596895_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13588288 - 13596895
Intron Length:
8608

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTGTGC
5'SS Class:
major
3'SS Sequence:
TCATTTCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCTTCAT
U12 Branch Point Sequence:
AAGCCCTTCATT
Flanking Amino Acid:
AIDALGPTTEDTDECHSSPC
Intron Amino Acid Position:
1950

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.8
0.44
1.1
57.8
42.2
Major BPS
75
0.62
1.1
77.2
36
Major PPT
85.7
0.8
0.8
80.8
30.9
Minor 5ss
36.1
-1.6
3.4
50.8
45.8
Minor BPS
55.1
0.24
1.8
69.06
41.9

Associated Gene:

Gene:
ACAN
Ensembl Gene ID:
ENSAPLG00000011257
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011772
13584490 - 13629372
44883