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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_13603594_13605614_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13603594 - 13605614
Intron Length:
2021

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TCTCATGATGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTCAT
U12 Branch Point Sequence:
TGTCTCATGATG
Flanking Amino Acid:
HSRYDAICYSGDDFEALVPG
Intron Amino Acid Position:
347

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
71.5
33.9
Major BPS
77.2
0.67
1.2
79.6
35.6
Major PPT
71.4
0.48
1
65.5
39.8
Minor 5ss
28
-2.5
3
33.3
41.7
Minor BPS
48.9
-0.2
1.7
57.35
38.1

Associated Gene:

Gene:
ACAN
Ensembl Gene ID:
ENSAPLG00000011257
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018919
13584490 - 13629372
44883
ENSAPLT00000011772
13584490 - 13629372
44883