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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_1364173_1364307_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1364173 - 1364307
Intron Length:
135

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGCTGAA
5'SS Class:
major
3'SS Sequence:
ATGTGTTGATCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TGCTTGTTGATT
Flanking Amino Acid:
REHKGTAAKQLALILSAAEE
Intron Amino Acid Position:
986

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.8
0.54
1.2
68.5
38.7
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
64.3
0.32
1.1
63.1
46.7
Minor 5ss
36.1
-1.6
3.4
48.5
47.7
Minor BPS
50.5
0.1
2.1
70.59
41.2

Associated Gene:

Gene:
CEP152
Ensembl Gene ID:
ENSAPLG00000005273
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033593
1358010 - 1378314
20305
ENSAPLT00000005496
1358010 - 1378314
20305