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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_1367243_1367352_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1367243 - 1367352
Intron Length:
110

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGACAA
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTTGTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTTAA
U12 Branch Point Sequence:
TGTTACTTGACT
Flanking Amino Acid:
ENETLLQEVQKHTLTIEELK
Intron Amino Acid Position:
659

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.8
73
33.3
Major BPS
69.7
0.49
1
59.9
38.5
Major PPT
82.7
0.73
0.9
76.2
37.8
Minor 5ss
25.8
-2.8
2.9
29.5
43.2
Minor BPS
75.9
0.9
1.4
89.55
34.2

Associated Gene:

Gene:
CEP152
Ensembl Gene ID:
ENSAPLG00000005273
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033593
1358010 - 1378314
20305
ENSAPLT00000005496
1358010 - 1378314
20305