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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_13679550_13679812_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13679550 - 13679812
Intron Length:
263

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCTGC
5'SS Class:
strong_major
3'SS Sequence:
CCCCTTGGCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TTCCTTCTAACC
Flanking Amino Acid:
AKHLLHKKIQVGCRGHSSVE
Intron Amino Acid Position:
128

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
69.2
38.5
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
65.4
0.35
1
63.4
36.9
Minor 5ss
38.8
-1.3
3
50.2
46.4
Minor BPS
55.7
0.16
1.7
67.77
37.9

Associated Gene:

Gene:
ISG20
Ensembl Gene ID:
ENSAPLG00000006478
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006706
13679346 - 13680483
1138