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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_13696616_13699359_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13696616 - 13699359
Intron Length:
2744

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTGCCT
5'SS Class:
major
3'SS Sequence:
CCTCTCTCCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGGTAAC
U12 Branch Point Sequence:
CCCGGGGTAACC
Flanking Amino Acid:
VTLRVTDPSQPSFFVVYNMV
Intron Amino Acid Position:
321

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69
0.45
1.1
60
44.4
Major BPS
46.7
-0.2
1.4
47.1
44.6
Major PPT
76.9
0.6
0.7
68.7
31.7
Minor 5ss
32.4
-2
3.5
49
46.7
Minor BPS
34
-1.2
2.6
40.58
46.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012795
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044432
13695454 - 13705951
10498
ENSAPLT00000021869
13695454 - 13705761
10308
ENSAPLT00000013326
13695454 - 13705152
9699