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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_1370414_1370970_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1370414 - 1370970
Intron Length:
557

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAATTTA
5'SS Class:
major
3'SS Sequence:
CTCTTACTTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTATTAT
U12 Branch Point Sequence:
TGTCTCTTACTT
Flanking Amino Acid:
ISNKMNKALQEELMELKEEI
Intron Amino Acid Position:
497

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1.1
78.6
31.3
Major BPS
67
0.42
1.3
60.1
46.3
Major PPT
72.4
0.5
1
75.8
32
Minor 5ss
39.5
-1.2
2.8
50.2
46
Minor BPS
62
0.45
1.6
77.64
39

Associated Gene:

Gene:
CEP152
Ensembl Gene ID:
ENSAPLG00000005273
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033593
1358010 - 1378314
20305
ENSAPLT00000005496
1358010 - 1378314
20305