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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_13704995_13705848_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13704995 - 13705848
Intron Length:
854

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGA|GTACGTGGT
5'SS Class:
major
3'SS Sequence:
CTTCTTTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
CCTTGCTCACGT
Flanking Amino Acid:
FAISVQRTNAEARTNPGGHL
Intron Amino Acid Position:
539

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.2
0.38
1.1
61
44.1
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
88.7
0.87
0.6
84.3
23.6
Minor 5ss
34.6
-1.8
3.5
44.9
44.3
Minor BPS
41.5
-0.5
2.3
59.08
50

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012795
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044432
13695454 - 13705951
10498