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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_13715320_13717067_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13715320 - 13717067
Intron Length:
1748

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCCCCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAC
U12 Branch Point Sequence:
AGAATACTAACC
Flanking Amino Acid:
AQTAGIAAATKARGKGVLHV
Intron Amino Acid Position:
119

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
1
69.1
43.2
Major BPS
76.8
0.67
0.9
75.9
25
Major PPT
79.8
0.67
0.7
77.4
24.6
Minor 5ss
32.9
-2
3
42.1
44.4
Minor BPS
44.7
-0.4
1.9
53.5
36.8

Associated Gene:

Gene:
MRPS11
Ensembl Gene ID:
ENSAPLG00000012913
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013443
13714676 - 13718725
4050