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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_13717198_13717914_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13717198 - 13717914
Intron Length:
717

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGCAAA
5'SS Class:
major
3'SS Sequence:
TCTCTTTCCGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGCTTAT
U12 Branch Point Sequence:
GCTAGCTTATTC
Flanking Amino Acid:
PIAHVKATYNNTHIQVVGFD
Intron Amino Acid Position:
75

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1
73
33.2
Major BPS
67.4
0.43
1.1
57.4
41.4
Major PPT
80
0.68
0.7
76.8
25.2
Minor 5ss
35
-1.7
2.9
39.8
40.3
Minor BPS
46.5
-0.2
2
55.4
43.2

Associated Gene:

Gene:
MRPS11
Ensembl Gene ID:
ENSAPLG00000012913
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013443
13714676 - 13718725
4050