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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_13717984_13718570_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
13717984 - 13718570
Intron Length:
587

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAA|GCACAGCGC
5'SS Class:
major
3'SS Sequence:
TCCTGCAGAGGAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
CTGATTTTATCT
Flanking Amino Acid:
SGCVMRGNLSNSMRWDGKTY
Intron Amino Acid Position:
52

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
60.5
0.25
1.2
54.4
39.4
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
45.3
-0.2
1.7
47.6
39.2
Minor 5ss
20.8
-3.4
4.1
31.8
40.6
Minor BPS
52.1
0.14
1.7
67.39
44

Associated Gene:

Gene:
MRPS11
Ensembl Gene ID:
ENSAPLG00000012913
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013443
13714676 - 13718725
4050