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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_13718963_13719599_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13718963 - 13719599
Intron Length:
637

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCGGCT
5'SS Class:
major
3'SS Sequence:
TTTTTTTGGGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
TGTTTCTGACAT
Flanking Amino Acid:
LQFSPAPRVTDADKKDDWKS
Intron Amino Acid Position:
124

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.9
0.4
1.2
62.3
41.3
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
81.1
0.7
1
80.6
37
Minor 5ss
36.3
-1.5
3.8
56.7
47.5
Minor BPS
52.4
0.15
1.8
74.71
41.6

Associated Gene:

Gene:
MRPL46
Ensembl Gene ID:
ENSAPLG00000013089
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013636
13718466 - 13720896
2431