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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_13719774_13720446_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13719774 - 13720446
Intron Length:
673

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTATGTAGC
5'SS Class:
major
3'SS Sequence:
TTTCTTTCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
GTGTTCTTATAT
Flanking Amino Acid:
TAERAMAMFLGDHIQAKILG
Intron Amino Acid Position:
182

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1
68.8
42.3
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
91.6
0.94
0.6
84.9
29.9
Minor 5ss
41.7
-0.9
2.5
45.6
42.8
Minor BPS
57.8
0.32
1.7
73.56
43.1

Associated Gene:

Gene:
MRPL46
Ensembl Gene ID:
ENSAPLG00000013089
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013636
13718466 - 13720896
2431