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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_13751215_13752673_F

Intron Information:

Intron Rank:
148105
Intron Class:
major
Intron Phase:
Intron Coordinates:
13751215 - 13752673
Intron Length:
1459

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGAAGG
5'SS Class:
strong_major
3'SS Sequence:
CTGCTCTCGCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTCCAT
U12 Branch Point Sequence:
ACCTTCTCCATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
66.4
45.1
Major BPS
64.7
0.37
1.3
74.7
40
Major PPT
68.3
0.41
1
61.7
40
Minor 5ss
32.4
-2
2.9
32.4
41.9
Minor BPS
43.7
-0.6
1.9
44.65
42.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029742
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027714
13751044 - 13758551
7508