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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_1376248_1376459_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1376248 - 1376459
Intron Length:
212

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TATCCATTTATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
AAATTCTAAACC
Flanking Amino Acid:
DHPLVVDPQNNYEEGQNLYP
Intron Amino Acid Position:
86

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
1
80.8
34.4
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
76
0.58
0.8
69.7
35.3
Minor 5ss
46.2
-0.4
2.8
62.9
41.8
Minor BPS
60.4
0.31
1.6
66.56
38.7

Associated Gene:

Gene:
CEP152
Ensembl Gene ID:
ENSAPLG00000005273
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005496
1358010 - 1378314
20305