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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_13798355_13799586_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13798355 - 13799586
Intron Length:
1232

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTGAGTATG
5'SS Class:
major
3'SS Sequence:
AATCTCTTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAA
U12 Branch Point Sequence:
GCTCTCTCAAAT
Flanking Amino Acid:
DMELYTGLQRLTIRNSGLRN
Intron Amino Acid Position:
108

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.1
71.2
40.3
Major BPS
73.4
0.58
0.9
75.3
29.7
Major PPT
79.4
0.66
0.9
70.1
40.4
Minor 5ss
36.8
-1.5
2.9
52.3
44.3
Minor BPS
51.7
0.13
1.7
67.7
42.5

Associated Gene:

Gene:
NTRK3
Ensembl Gene ID:
ENSAPLG00000013271
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013894
13772156 - 13962239
190084