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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_13799659_13815311_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13799659 - 13815311
Intron Length:
15653

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTGAGTGTG
5'SS Class:
major
3'SS Sequence:
CGTTAATTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAC
U12 Branch Point Sequence:
TTCCCGTTAATT
Flanking Amino Acid:
AFAKNPHLRYIDLSGNRLTT
Intron Amino Acid Position:
132

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
74.3
36.2
Major BPS
78.8
0.71
0.9
69.7
37.1
Major PPT
77.9
0.63
0.9
73.7
40.5
Minor 5ss
33.3
-1.9
3.4
44.7
43.5
Minor BPS
62.3
0.46
2.1
81.08
41.1

Associated Gene:

Gene:
NTRK3
Ensembl Gene ID:
ENSAPLG00000013271
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013894
13772156 - 13962239
190084