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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_13821943_13823699_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13821943 - 13823699
Intron Length:
1757

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAAGGGGC
5'SS Class:
major
3'SS Sequence:
TCTGCCCTCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAC
U12 Branch Point Sequence:
TGCTCCTCACCT
Flanking Amino Acid:
PLQEMNITQCDLPEISVSHV
Intron Amino Acid Position:
208

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
64.8
41.3
Major BPS
72.4
0.56
1
73.5
32.5
Major PPT
70.6
0.46
0.8
62.1
34.7
Minor 5ss
30.1
-2.3
3.5
41.6
45.3
Minor BPS
59
0.36
1.9
76.98
45.2

Associated Gene:

Gene:
NTRK3
Ensembl Gene ID:
ENSAPLG00000013271
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013894
13772156 - 13962239
190084