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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_13823843_13824439_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13823843 - 13824439
Intron Length:
597

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGAAT
5'SS Class:
strong_major
3'SS Sequence:
CTGTGATGTATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTGAT
U12 Branch Point Sequence:
TTCTCTGTGATG
Flanking Amino Acid:
ADLHSINTHQTNLNWTNVHA
Intron Amino Acid Position:
256

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
1
78.6
37.2
Major BPS
68.9
0.47
1.2
60.7
45.9
Major PPT
63.9
0.31
1
57.7
42.4
Minor 5ss
32.5
-2
3.5
47.3
48.3
Minor BPS
49.7
-0.1
2.1
61.38
41.8

Associated Gene:

Gene:
NTRK3
Ensembl Gene ID:
ENSAPLG00000013271
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013894
13772156 - 13962239
190084