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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_13827032_13830848_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13827032 - 13830848
Intron Length:
3817

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGATAT
5'SS Class:
major
3'SS Sequence:
GTCCTTTCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTAAT
U12 Branch Point Sequence:
GTCCTTTCCACA
Flanking Amino Acid:
KGHFLEKPFPESTDNFVSIG
Intron Amino Acid Position:
400

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
73.8
33
Major BPS
79.3
0.73
1.1
77.9
34.9
Major PPT
77.3
0.61
0.8
71.7
32.9
Minor 5ss
32.8
-2
3.4
46.1
49.1
Minor BPS
43.9
-0.4
1.9
52.9
39.6

Associated Gene:

Gene:
NTRK3
Ensembl Gene ID:
ENSAPLG00000013271
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013894
13772156 - 13962239
190084