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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_13830873_13831426_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13830873 - 13831426
Intron Length:
554

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
GTTTTGGTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTCAC
U12 Branch Point Sequence:
TCTCACTGAATC
Flanking Amino Acid:
FPESTDNFVSIGDYEVSPTP
Intron Amino Acid Position:
408

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.9
82.5
28.6
Major BPS
67.3
0.43
1.2
71.3
36.7
Major PPT
80.3
0.68
1
76.9
42.1
Minor 5ss
39
-1.2
3.3
52.8
38.5
Minor BPS
55.3
0.14
1.7
65.95
39.4

Associated Gene:

Gene:
NTRK3
Ensembl Gene ID:
ENSAPLG00000013271
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013894
13772156 - 13962239
190084