About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_1385606_1387054_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1385606 - 1387054
Intron Length:
1449

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAGGTGCT
5'SS Class:
major
3'SS Sequence:
CCTTTCATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TTCCCTTTCATT
Flanking Amino Acid:
QGHGSPLHHAKLPEAVQQSA
Intron Amino Acid Position:
496

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1
72.8
35.1
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
84
0.76
0.8
81.3
29.1
Minor 5ss
35.6
-1.6
3.5
49.9
40.8
Minor BPS
59.2
0.37
1.7
76.64
40.8

Associated Gene:

Gene:
SHC4
Ensembl Gene ID:
ENSAPLG00000004896
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005091
1383412 - 1414568
31157