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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_138664_139255_R

Intron Information:

Intron Rank:
40
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
138664 - 139255
Intron Length:
592

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCCCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
CACTTCTCAACA
Flanking Amino Acid:
VATSGQSNDNRNVCLWDTLV
Intron Amino Acid Position:
2893

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.8
81.9
26.3
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
88.3
0.86
0.6
86
21
Minor 5ss
44.4
-0.6
2.7
57.6
47.1
Minor BPS
59.3
0.29
1.6
64.13
42.4

Associated Gene:

Gene:
DMXL2
Ensembl Gene ID:
ENSAPLG00000008330
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038574
136000 - 191755
55756
ENSAPLT00000022556
136006 - 191755
55750
ENSAPLT00000008801
136000 - 191755
55756