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Intron Name: Anas_platyrhynchos_platyrhynchos_11_1388663_1390233_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1388663 - 1390233

Intron Length:

1571

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCA|GTAAGTACA

5'SS Class:

major

3'SS Sequence:

GATTTCTGTGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTATGAT

U12 Branch Point Sequence:

TTGTATGTGACT

Flanking Amino Acid:

LIQCRKQPCSTGSPTFINLY

Intron Amino Acid Position:

416

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.6

0.65

74.8

35.3

Major BPS

84.6

0.86

41.2

Major PPT

75.3

0.57

69.6

41.2

Minor 5ss

38.2

-1.3

2.7

49.5

40.3

Minor BPS

49.4

0.04

2.2

75.5

41.8

Associated Gene:

Gene:

SHC4

Ensembl Gene ID:

ENSAPLG00000004896

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005091

1383412 - 1414568

31157