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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_1392478_1393009_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1392478 - 1393009
Intron Length:
532

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGGAAA
5'SS Class:
strong_major
3'SS Sequence:
TGTCTCTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGTTAAA
U12 Branch Point Sequence:
GTTCGTTTACCT
Flanking Amino Acid:
YVAKDPVNQRACHILECPNG
Intron Amino Acid Position:
314

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
76.6
33.7
Major BPS
66.4
0.41
1.1
67.7
36.5
Major PPT
86.1
0.81
0.8
80.7
31.3
Minor 5ss
37.7
-1.4
3.1
47.6
48.1
Minor BPS
50.7
0.1
2
73.8
43.1

Associated Gene:

Gene:
SHC4
Ensembl Gene ID:
ENSAPLG00000004896
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005091
1383412 - 1414568
31157