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Intron Name: Anas_platyrhynchos_platyrhynchos_11_1393062_1395923_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1393062 - 1395923

Intron Length:

2862

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCA|GTAAGTATT

5'SS Class:

strong_major

3'SS Sequence:

TTCTTTCCTAAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAA

U12 Branch Point Sequence:

TCTTTCCTAAAG

Flanking Amino Acid:

SISFASGGDPDTTDYVAYVA

Intron Amino Acid Position:

297

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.5

0.72

32.3

Major BPS

90.4

0.7

90.2

19.3

Major PPT

77.6

0.62

78.9

27.4

Minor 5ss

43.9

-0.7

2.9

66.1

38.6

Minor BPS

0.05

1.9

64.91

42.8

Associated Gene:

Gene:

SHC4

Ensembl Gene ID:

ENSAPLG00000004896

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005091

1383412 - 1414568

31157