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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_13975277_13982600_R

Intron Information:

Intron Rank:
151384
Intron Class:
major
Intron Phase:
Intron Coordinates:
13975277 - 13982600
Intron Length:
7324

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTATGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTATGTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
TCTTCCTCACCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
85.3
31.1
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
86.8
0.83
0.8
84.8
35.6
Minor 5ss
47.9
-0.2
2.5
65.4
40.1
Minor BPS
65.5
0.56
1.9
84.08
42.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028998
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029905
13972259 - 14023750
51492