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Intron Name: Anas_platyrhynchos_platyrhynchos_11_1397717_1398590_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1397717 - 1398590

Intron Length:

874

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAATACA

5'SS Class:

strong_major

3'SS Sequence:

TTTGTATTCAAAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTGTAT

U12 Branch Point Sequence:

TTGTATTCAAAG

Flanking Amino Acid:

GTNGAIKKRKPPVKFLSSVL

Intron Amino Acid Position:

239

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.7

0.89

0.9

83.1

28.6

Major BPS

71.5

0.53

1.4

71.7

44.6

Major PPT

70.7

0.47

1.1

71.3

37.8

Minor 5ss

35.4

-1.7

2.7

43.5

43.6

Minor BPS

48.4

-0.2

1.9

57.92

43.5

Associated Gene:

Gene:

SHC4

Ensembl Gene ID:

ENSAPLG00000004896

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005091

1383412 - 1414568

31157