Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_13982670_14002518_R

Intron Information:

Intron Rank:

151385

Intron Class:

major

Intron Phase:

Intron Coordinates:

13982670 - 14002518

Intron Length:

19849

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGGGCT

5'SS Class:

strong_major

3'SS Sequence:

TTGCCTCCTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTGAC

U12 Branch Point Sequence:

ACCTTTTTGACA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.9

0.85

0.9

75.6

33.8

Major BPS

86.5

0.91

0.8

77.4

37.4

Major PPT

79.6

0.67

0.8

73.8

31.3

Minor 5ss

26.4

-2.7

3.5

38.5

46.7

Minor BPS

61.5

0.36

1.2

63.09

37.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000028998

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029905

13972259 - 14023750

51492