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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_1398655_1406911_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1398655 - 1406911
Intron Length:
8257

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGCACT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTATTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAA
U12 Branch Point Sequence:
ATTTTTCTATTT
Flanking Amino Acid:
LDFGTRTQVTREAISRLCEA
Intron Amino Acid Position:
217

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
75.3
40.8
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
85.7
0.8
0.7
81.7
29
Minor 5ss
40.6
-1
3.2
58.1
46.3
Minor BPS
50.4
0.09
1.8
74.15
37.3

Associated Gene:

Gene:
SHC4
Ensembl Gene ID:
ENSAPLG00000004896
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005091
1383412 - 1414568
31157