About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_142223_142750_R

Intron Information:

Intron Rank:
36
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
142223 - 142750
Intron Length:
528

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTATGAAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTACTTTAAAA
Flanking Amino Acid:
SGQTSTGAGVLIKRNLNNVK
Intron Amino Acid Position:
2774

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
86.2
29.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
80.3
0.68
1
83.7
30.5
Minor 5ss
38.5
-1.3
2.8
49.8
40.3
Minor BPS
74
0.75
1.3
81.55
33.1

Associated Gene:

Gene:
DMXL2
Ensembl Gene ID:
ENSAPLG00000008330
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038574
136000 - 191755
55756
ENSAPLT00000022556
136006 - 191755
55750
ENSAPLT00000008801
136000 - 191755
55756