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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_1425861_1425956_R

Intron Information:

Intron Rank:
18
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
1425861 - 1425956
Intron Length:
96

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGGTC
5'SS Class:
strong_major
3'SS Sequence:
AAATCCATACCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AACAAAT
U12 Branch Point Sequence:
AAATCCATACCA
Flanking Amino Acid:
SSKAAVPEKAGEKEEVKPDD
Intron Amino Acid Position:
906

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
73.2
36.2
Major BPS
60.7
0.27
1
65.3
28.1
Major PPT
59.2
0.21
1.1
49.7
42.7
Minor 5ss
33.8
-1.8
3.7
49.8
46.8
Minor BPS
52.5
0.07
1.9
65.34
40.3

Associated Gene:

Gene:
SECISBP2L
Ensembl Gene ID:
ENSAPLG00000004694
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004866
1425382 - 1450483
25102