Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_14264876_14279761_R

Intron Information:

Intron Rank:

136393

Intron Class:

major

Intron Phase:

Intron Coordinates:

14264876 - 14279761

Intron Length:

14886

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTCAGTGAT

5'SS Class:

strong_major

3'SS Sequence:

TTTTTCCCTCCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

ATTTTTTTATTT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.3

0.76

1.2

81.4

32.7

Major BPS

96.5

1.15

0.6

34.2

Major PPT

89.7

0.89

0.6

82.1

29.9

Minor 5ss

29.8

-2.3

3.1

40.6

45.6

Minor BPS

0.58

1.5

81.3

34.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000020813

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028556

14263772 - 14280746

16975