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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_142890_143727_R

Intron Information:

Intron Rank:
35
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
142890 - 143727
Intron Length:
838

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGATTA
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGCAAAA
U12 Branch Point Sequence:
TTGTTTTTTACA
Flanking Amino Acid:
IGEEYDRESKSSDDIDFRGS
Intron Amino Acid Position:
2727

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
1
77.8
33.3
Major BPS
47.7
-0.1
1
51
32
Major PPT
91.8
0.94
0.7
87.5
30
Minor 5ss
40.1
-1.1
3.4
55.5
48.7
Minor BPS
64.3
0.44
1.6
74.12
37.8

Associated Gene:

Gene:
DMXL2
Ensembl Gene ID:
ENSAPLG00000008330
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008801
136000 - 191755
55756
ENSAPLT00000038574
136000 - 191755
55756
ENSAPLT00000022556
136006 - 191755
55750