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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_14320532_14325211_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14320532 - 14325211
Intron Length:
4680

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTACCTCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAA
U12 Branch Point Sequence:
TTGCCTTTTACC
Flanking Amino Acid:
YLRSIGRAPLVFCDYHGHSQ
Intron Amino Acid Position:
904

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.8
88.7
25.1
Major BPS
75.6
0.64
1.1
77.7
37.1
Major PPT
84.5
0.78
0.8
81.7
30.1
Minor 5ss
36.4
-1.5
3
48.3
41.8
Minor BPS
62.6
0.38
1.6
72
39.3

Associated Gene:

Gene:
AGBL1
Ensembl Gene ID:
ENSAPLG00000013665
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014262
14320050 - 14470955
150906