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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_14325342_14364390_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14325342 - 14364390
Intron Length:
39049

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGATTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TGTTTTTTGATT
Flanking Amino Acid:
MLNPDGVINGNHRCSLSGDD
Intron Amino Acid Position:
860

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
77.7
33.3
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
87.9
0.85
0.8
85.7
33.4
Minor 5ss
38.2
-1.3
3
49.5
41.2
Minor BPS
71.4
0.75
1.1
82.67
32.4

Associated Gene:

Gene:
AGBL1
Ensembl Gene ID:
ENSAPLG00000013665
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014262
14320050 - 14470955
150906