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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_1433777_1433930_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1433777 - 1433930
Intron Length:
154

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGCCCC
5'SS Class:
major
3'SS Sequence:
GTTCATCTTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTCTCTGTATTT
Flanking Amino Acid:
EISMEQKKLQEALSKAAGKK
Intron Amino Acid Position:
472

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
58.5
40.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
75.9
0.58
0.9
69.3
36.7
Minor 5ss
39.8
-1.1
2.9
51.2
45.5
Minor BPS
49.8
0.06
2.2
74.81
43.2

Associated Gene:

Gene:
SECISBP2L
Ensembl Gene ID:
ENSAPLG00000004694
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020322
1423882 - 1450483
26602
ENSAPLT00000004866
1425382 - 1450483
25102