Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_1435672_1435929_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1435672 - 1435929

Intron Length:

258

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATGTTGT

5'SS Class:

strong_major

3'SS Sequence:

GTTATTTTTTTAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTGTTAT

U12 Branch Point Sequence:

TATTTGTTATTT

Flanking Amino Acid:

RQAEQRNSSQSGFRCRGHST

Intron Amino Acid Position:

344

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.4

0.9

80.5

Major BPS

81.3

0.78

1.1

71.7

44.6

Major PPT

82.9

0.74

0.8

81.3

36.3

Minor 5ss

-0.2

2.5

67.3

43.8

Minor BPS

51.5

0.13

2.2

76.26

Associated Gene:

Gene:

SECISBP2L

Ensembl Gene ID:

ENSAPLG00000004694

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020322

1423882 - 1450483

26602

ENSAPLT00000004866

1425382 - 1450483

25102